{"id":2562,"date":"2020-02-07T11:12:40","date_gmt":"2020-02-07T19:12:40","guid":{"rendered":"https:\/\/research.wsu.edu\/advancement\/?post_type=tribe_events&#038;p=2562"},"modified":"2020-02-07T11:23:19","modified_gmt":"2020-02-07T19:23:19","slug":"ncbi-blast","status":"publish","type":"tribe_events","link":"https:\/\/research.wsu.edu\/advancement\/event\/ncbi-blast\/","title":{"rendered":"NCBI Functional Genomics Workshop &#8211; 9a-12p"},"content":{"rendered":"<p><span style=\"font-size: 14pt;\"><strong>An Update on NCBI BLAST and Other Sequence Analysis Tools<\/strong><\/span><\/p>\n<p>This workshop highlights new displays and features and introduces best practices for use of NCBI BLAST services. You will learn when and how to use important but often misunderstood aspects of the BLAST programs, specialized services, and databases. You will explore other important sequence analysis services, including Primer BLAST, an oligonucleotide primer designer and specificity checker, and COBALT, a multiple protein sequence alignment tool. Finally, you will see brief demonstrations of standalone BLAST and related tools, including SRA-Toolkit BLAST and Magic-BLAST.Specifically, you will learn to:<\/p>\n<ul>\n<li>Select the correct NCBI alignment tool for your task<\/li>\n<li>Choose the best BLAST database for your search goal<\/li>\n<li>Understand and use the new BLAST results page, output formats and statistics<\/li>\n<li>Display BLAST results in genomic context using graphical displays<\/li>\n<li>Analyze nucleotide primers: design, check the specificity, and display primer alignments<\/li>\n<li>Assess the taxonomic distribution of your BLAST matches and use the TreeViewer display to visualize relationships<\/li>\n<li>Use standalone BLAST, Magic-BLAST and SRA-BLAST to search local databases and remote database on the NCBI server<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong><span style=\"font-size: 14pt;\">RSVP and learn about other sessions at: <a href=\"https:\/\/research.wsu.edu\/advancement\/ncbi-workshop\/\">https:\/\/research.wsu.edu\/advancement\/ncbi-workshop\/<\/a><\/span><\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p>An Update on NCBI BLAST and Other Sequence Analysis Tools This workshop highlights new displays and features and introduces best practices for use of NCBI BLAST services. You will learn [&hellip;]<\/p>\n","protected":false},"author":3530,"featured_media":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"_tribe_events_status":"","_tribe_events_status_reason":""},"tags":[584,585,510],"tribe_events_cat":[535],"wsuwp_university_location":[332],"wsuwp_university_org":[411,506],"event_city":"","event_state":"","event_venue":"Holland Terrell Library 20E","event_organizer":"Office of Research","event_organizer_email":"","event_organizer_phone":"","event_organizer_website":"","event_website":"","event_cost":"","event_excerpt":"An Update on NCBI BLAST and Other Sequence Analysis Tools\nThis workshop highlights new displays and features and introduces best practices for use of NCBI BLAST services. You will learn when and how to use important but often misunderstood aspects of the BLAST programs, specialized services, and databases. You will explore other important sequence analysis services, including Primer BLAST, an oligonucleotide primer designer and specificity checker, and COBALT, a multiple protein sequence alignment tool. Finally, you will see brief demonstrations of standalone BLAST and related tools, including SRA-Toolkit BLAST and Magic-BLAST.Specifically, you will learn to:\n\nSelect the correct NCBI alignment tool for your task\nChoose the best BLAST database for your search goal\nUnderstand and use the new BLAST results page, output formats and statistics\nDisplay BLAST results in genomic context using graphical displays\nAnalyze nucleotide primers: design, check the specificity, and display primer alignments\nAssess the taxonomic distribution of your BLAST matches and use the TreeViewer display to visualize relationships\nUse standalone BLAST, Magic-BLAST and SRA-BLAST to search local databases and remote database on the NCBI server\n\n&nbsp;\nRSVP and learn about other sessions at: https:\/\/research.wsu.edu\/advancement\/ncbi-workshop\/","start_date":"2020-04-15 09:00:00","end_date":"2020-04-15 12:00:00","_links":{"self":[{"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/events\/2562"}],"collection":[{"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/events"}],"about":[{"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/types\/tribe_events"}],"author":[{"embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/users\/3530"}],"replies":[{"embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/comments?post=2562"}],"version-history":[{"count":4,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/events\/2562\/revisions"}],"predecessor-version":[{"id":2575,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/events\/2562\/revisions\/2575"}],"wp:attachment":[{"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/media?parent=2562"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/tags?post=2562"},{"taxonomy":"tribe_events_cat","embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/tribe_events_cat?post=2562"},{"taxonomy":"wsuwp_university_location","embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/wsuwp_university_location?post=2562"},{"taxonomy":"wsuwp_university_org","embeddable":true,"href":"https:\/\/research.wsu.edu\/advancement\/wp-json\/wp\/v2\/wsuwp_university_org?post=2562"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}